Question

Cannot install Scipy

Posted December 31, 2013 7.2k views
Hi, I am currently unable to install Scipy in my virtualenv. I have tried building via pip, wheels (as per the stack overflow suggestion), and the default package manager, but none of them have worked. My error message is as follows: c++: internal compiler error: Killed (program cc1plus) error: Command "c++ -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -D__STDC_FORMAT_MACROS=1 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c scipy/sparse/sparsetools/csr_wrap.cxx -o build/temp.linux-x86_64-2.7/scipy/sparse/sparsetools/csr_wrap.o" failed with exit status 4 I have the latest version of gcc as well as all of the scipy dependencies, so I am not sure what is causing this problem.
Add a comment
burstbreathz
By:
burstbreathz
Add a comment
1 comment

These answers are provided by our Community. If you find them useful, show some love by clicking the heart. If you run into issues leave a comment, or add your own answer to help others.

×
2 answers
travisirby January 4, 2014
I had the same problem, and I believe it's because the scipy install runs out of ram. I followed digitalocean's guide to adding a swap file and it worked afterwards:

https://www.digitalocean.com/community/articles/how-to-add-swap-on-ubuntu-12-04

I'd make the swap 1024 megs instead of 512 because I got close to running out.
How To Add Swap on Ubuntu 12.04
by Etel Sverdlov
Linux swaps allow a system to harness more memory than was originally physically available. Here's how to set up a linux swap file on Ubuntu 12.04
Reply Report
moringa April 20, 2015

Yup, the article below (travisirby’s answer) worked for me with the suggested 1024 megs of swap.

Reply Report
Submit an Answer

Looking for something else?

Ask a new question Search for more help