Certificate not valid for domain

Hi,

I am trying to setup a wildcard SSL for my domain. I generated it using certbot and got the congratulations message via:

/usr/local/bin/certbot-auto certonly --manual --preferred-challenges=dns --email=peter@mydomain.com --server https://acme-v02.api.letsencrypt.org/directory --agree-tos -d mydomain.com

Going to https://www.mydomain.com works fine, the problem is when I go to https://mydomain.com in Firefox I get:

Web sites prove their identity via certificates. Firefox does not trust this site because it uses a certificate that is not valid for mydomain.com. The certificate is only valid for www.mydomain.com.

Here is my Apache config:

<IfModule mod_ssl.c>
<VirtualHost *:443>
        ServerAdmin peter@mydomain.com
        ServerName mydomain.com
        ServerAlias www.mydomain.com audio.mydomain.com mydomain.com

        DocumentRoot /home/mydomain/repos/mydomain.com/public
        <Directory /home/mydomain/repos/mydomain.com/public>
                Allowoverride All
                Options FollowSymLinks
                Require all granted
        </Directory>

        CustomLog ${APACHE_LOG_DIR}/access.log combined
        ErrorLog ${APACHE_LOG_DIR}/error.log

SSLCertificateFile /etc/letsencrypt/live/mydomain.com-0001/fullchain.pem
SSLCertificateKeyFile /etc/letsencrypt/live/mydomain.com-0001/privkey.pem

Include /etc/letsencrypt/options-ssl-apache.conf
</VirtualHost>
</IfModule>

This is the output of apachectl -S

VirtualHost configuration:
*:443                  is a NameVirtualHost
         default server mydomain.com (/etc/apache2/sites-enabled/001-mydomain.com-le-ssl.conf:2)
         port 443 namevhost mydomain.com (/etc/apache2/sites-enabled/001-mydomain.com-le-ssl.conf:2)
                 alias www.mydomain.com
                 alias mydomain.com
         port 443 namevhost mydomain.com (/etc/apache2/sites-enabled/002-bookstack-le-ssl.conf:2)
                 alias wiki.mydomain.com
         port 443 namevhost git.mydomain.com (/etc/apache2/sites-enabled/003-gog-le-ssl.conf:2)
                 alias git
*:80                   is a NameVirtualHost
         default server mydomain.com (/etc/apache2/sites-enabled/001-mydomain.com.conf:1)
         port 80 namevhost mydomain.com (/etc/apache2/sites-enabled/001-mydomain.com.conf:1)
                 alias www.mydomain.com
                 alias audio.mydomain.com
         port 80 namevhost mydomain.com (/etc/apache2/sites-enabled/002-bookstack.conf:1)
                 alias wiki.mydomain.com
         port 80 namevhost git.mydomain.com (/etc/apache2/sites-enabled/003-gog.conf:1)
                 alias git
ServerRoot: "/etc/apache2"
Main DocumentRoot: "/var/www/html"
Main ErrorLog: "/var/log/apache2/error.log"
Mutex ssl-stapling: using_defaults
Mutex proxy: using_defaults
Mutex ssl-cache: using_defaults
Mutex default: dir="/var/lock/apache2" mechanism=fcntl
Mutex mpm-accept: using_defaults
Mutex watchdog-callback: using_defaults
Mutex rewrite-map: using_defaults
PidFile: "/var/run/apache2/apache2.pid"
Define: DUMP_VHOSTS
Define: DUMP_RUN_CFG
User: name="www-data" id=33
Group: name="www-data" id=33

And the output of /usr/local/bin/certbot-auto certificates

Requesting to rerun /usr/local/bin/certbot-auto with root privileges...
/opt/eff.org/certbot/venv/local/lib/python2.7/site-packages/cryptography/hazmat/bindings/openssl/binding.py:163: CryptographyDeprecationWarning: OpenSSL version 1.0.1 is no longer supported by the OpenSSL project, please upgrade. The next version of cryptography will drop support for it.
  utils.CryptographyDeprecationWarning
Saving debug log to /var/log/letsencrypt/letsencrypt.log

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Found the following certs:
  Certificate Name: audio.mydomain.com-0001
    Domains: audio.mydomain.com
    Expiry Date: 2020-03-29 10:11:53+00:00 (VALID: 89 days)
    Certificate Path: /etc/letsencrypt/live/audio.mydomain.com-0001/fullchain.pem
    Private Key Path: /etc/letsencrypt/live/audio.mydomain.com-0001/privkey.pem
  Certificate Name: audio.mydomain.com
    Domains: audio.mydomain.com wiki.mydomain.com www.mydomain.com
    Expiry Date: 2019-05-23 11:46:42+00:00 (INVALID: EXPIRED)
    Certificate Path: /etc/letsencrypt/live/audio.mydomain.com/fullchain.pem
    Private Key Path: /etc/letsencrypt/live/audio.mydomain.com/privkey.pem
  Certificate Name: mydomain.com-0001
    Domains: *.mydomain.com
    Expiry Date: 2020-03-29 10:42:02+00:00 (VALID: 89 days)
    Certificate Path: /etc/letsencrypt/live/mydomain.com-0001/fullchain.pem
    Private Key Path: /etc/letsencrypt/live/mydomain.com-0001/privkey.pem
  Certificate Name: mydomain.com
    Domains: mydomain.com
    Expiry Date: 2020-03-29 10:50:21+00:00 (VALID: 89 days)
    Certificate Path: /etc/letsencrypt/live/mydomain.com/fullchain.pem
    Private Key Path: /etc/letsencrypt/live/mydomain.com/privkey.pem
  Certificate Name: www.mydomain.com
    Domains: www.mydomain.com
    Expiry Date: 2020-03-29 10:12:30+00:00 (VALID: 89 days)
    Certificate Path: /etc/letsencrypt/live/www.mydomain.com/fullchain.pem
    Private Key Path: /etc/letsencrypt/live/www.mydomain.com/privkey.pem
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Can anyone help?

Regards, Peter