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Hey friend,
When using something like Sentora, you will want to stick to the software stack that they install/support. If you want to go it on your own without a panel, building your own stack makes a bit more sense. Unless the developers publish instructions for upgrading it, I would strongly recommend avoiding it.
Typically in such an environment the idea is to let the developers control the whole of your stack, which allows them to ensure that the control panel continues to function as desired.
Jarland