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Based on the comment in this thread, from the Discourse co-founder Jeff Atwood, it sounds like the best practice would be to have Discourse set up as a subdomain instead of a subdirectory (folder).
So anyone answering the question above, please consider the question in the context of having Wordpress on the main domain and Discourse as a subdomain.
Best practice is to set up them up on separate droplets similar to how you set them up in Docker. You can user Apache tricks to the a subdirectory on Wordpress point to your discourse server.