App Platform Composer gets 404 from private GitHub repositories despite being granted access via DigitalOcean GitHub app

Hi there. I just got started with using App Platform, and have given my app access to our private GitHub repositories. Even in doing that, my build is failing due to Composer not being able to access the private repositories, getting a 404. For our old host, we set up deploy keys for every repository to allow Git access to those repositories, but I can’t seem to find any such setting on App Platform. I’ve double and triple checked that the DigitalOcean GitHub app has access granted to the repositories in question, but I’m guessing this isn’t being used by Git when it’s invoked via Composer?

Here’s the build log where you can see the four private drupal/omnipedia_* repositories returning a 404 towards the end:

[2022-10-07 06:01:20] => Initializing build
[2022-10-07 06:01:20] => Retrieving source code to /workspace
[2022-10-07 06:01:20] => Selecting branch "3.x_digitalocean"
[2022-10-07 06:01:24] => Checking out commit "2613d085e91a230c14e9ed1cb6a62a5c5eff87fb"
[2022-10-07 06:01:24] => Cloning submodules
[2022-10-07 06:01:25] => Got source_dir: /
[2022-10-07 06:01:25] => Using workspace root /workspace
[2022-10-07 06:01:25] 
[2022-10-07 06:01:25] => Building app using buildpacks
[2022-10-07 06:01:25] => Running buildpack detection
[2022-10-07 06:01:25] 
[2022-10-07 06:01:26]    heroku/nodejs-engine        v0.5.1    
[2022-10-07 06:01:26]    digitalocean/node           v0.3.4    (Node.js)
[2022-10-07 06:01:26]    digitalocean/php-appdetect  v0.0.3    
[2022-10-07 06:01:26]    heroku/php                  v0.210.4  (PHP)
[2022-10-07 06:01:26]    digitalocean/procfile       v0.0.3    (Procfile)
[2022-10-07 06:01:26]    digitalocean/custom         v0.1.1    (Custom Build Command)
[2022-10-07 06:01:26] 
[2022-10-07 06:01:26] For documentation on the buildpacks used to build your app, please see:
[2022-10-07 06:01:26] 
[2022-10-07 06:01:26]    Node.js  v0.3.4    https://do.co/apps-buildpack-node
[2022-10-07 06:01:26]    PHP      v0.210.4  https://do.co/apps-buildpack-php
[2022-10-07 06:01:26] 
[2022-10-07 06:01:26] => Building app
[2022-10-07 06:01:26] 
[2022-10-07 06:01:26] ---> Node.js Buildpack
[2022-10-07 06:01:26] ---> Installing toolbox
[2022-10-07 06:01:26] ---> - jq
[2022-10-07 06:01:26] ---> - yj
[2022-10-07 06:01:26] ---> Getting Node version
[2022-10-07 06:01:26] ---> Resolving Node version
[2022-10-07 06:01:27] ---> Downloading and extracting Node v16.17.1
[2022-10-07 06:01:30] ---> Parsing package.json
[2022-10-07 06:01:30] ---> No file to start server
[2022-10-07 06:01:30] ---> either use 'docker run' to start container or add index.js or server.js
[2022-10-07 06:01:30] Project contains package-lock.json, using npm
[2022-10-07 06:01:30] Using npm v8.15.0. To configure a different version of npm, set the engines.npm property in package.json.
[2022-10-07 06:01:30]   See https://do.co/apps-buildpack-node for further instructions.
[2022-10-07 06:01:30] Installing node_modules using npm (from package-lock.json)
[2022-10-07 06:01:31] Running npm ci
[2022-10-07 06:01:31] 
[2022-10-07 06:01:31] npm WARN old lockfile 
[2022-10-07 06:01:31] npm WARN old lockfile The package-lock.json file was created with an old version of npm,
[2022-10-07 06:01:31] npm WARN old lockfile so supplemental metadata must be fetched from the registry.
[2022-10-07 06:01:31] npm WARN old lockfile 
[2022-10-07 06:01:31] npm WARN old lockfile This is a one-time fix-up, please be patient...
[2022-10-07 06:01:31] npm WARN old lockfile 
[2022-10-07 06:01:34] 
[2022-10-07 06:01:34] added 109 packages, and audited 110 packages in 3s
[2022-10-07 06:01:34] 
[2022-10-07 06:01:34] 8 packages are looking for funding
[2022-10-07 06:01:34]   run `npm fund` for details
[2022-10-07 06:01:34] 
[2022-10-07 06:01:34] found 0 vulnerabilities
[2022-10-07 06:01:34] npm notice 
[2022-10-07 06:01:34] npm notice New minor version of npm available! 8.15.0 -> 8.19.2
[2022-10-07 06:01:34] npm notice Changelog: <https://github.com/npm/cli/releases/tag/v8.19.2>
[2022-10-07 06:01:34] npm notice Run `npm install -g npm@8.19.2` to update!
[2022-10-07 06:01:34] npm notice 
[2022-10-07 06:01:34] 
[2022-10-07 06:01:35] -----> Bootstrapping...
[2022-10-07 06:01:37] -----> Preparing platform package installation...
[2022-10-07 06:01:37] -----> Installing platform packages...
[2022-10-07 06:01:41]        - php (8.1.11)
[2022-10-07 06:01:41]        - ext-bcmath (bundled with php)
[2022-10-07 06:01:41]        - ext-gd (bundled with php)
[2022-10-07 06:01:41]        - apache (2.4.54)
[2022-10-07 06:01:41]        - composer (2.4.2)
[2022-10-07 06:01:41]        - nginx (1.22.0)
[2022-10-07 06:01:42]        NOTICE: detected userland polyfill packages for PHP extensions
[2022-10-07 06:01:42]        NOTICE: now attempting to install native extension packages
[2022-10-07 06:01:42]        Installing extensions provided by symfony/polyfill-mbstring:
       - ext-mbstring (bundled with php)ing... 
[2022-10-07 06:01:42]        Installing extensions provided by symfony/polyfill-iconv:
       - ext-iconv (already enabled)conv... 
[2022-10-07 06:01:43]        Installing extensions provided by symfony/polyfill-ctype:
       - ext-ctype (already enabled)type... 
[2022-10-07 06:01:44] -----> Installing dependencies...
[2022-10-07 06:01:44]        Composer version 2.4.2 2022-09-14 16:11:15
[2022-10-07 06:01:44]        Installing dependencies from lock file
[2022-10-07 06:01:44]        Verifying lock file contents can be installed on current platform.
[2022-10-07 06:01:44]        Package operations: 224 installs, 0 updates, 0 removals
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[2022-10-07 06:01:45]          - Downloading drupal/seckit (2.0.0)
[2022-10-07 06:01:45]          - Downloading drupal/security_review (1.0.0-alpha2)
[2022-10-07 06:01:45]          - Downloading drupal/session_limit (2.0.0-beta2)
[2022-10-07 06:01:45]          - Downloading paragonie/sodium_compat (v1.17.1)
[2022-10-07 06:01:45]          - Downloading paragonie/hidden-string (v2.0.0)
[2022-10-07 06:01:45]          - Downloading paragonie/halite (v5.1.0)
[2022-10-07 06:01:45]          - Downloading drupal/sodium (2.3.0)
[2022-10-07 06:01:45]          - Downloading drupal/subpathauto (1.2.0)
[2022-10-07 06:01:45]          - Downloading tijsverkoyen/css-to-inline-styles (2.2.4)
[2022-10-07 06:01:45]          - Downloading swiftmailer/swiftmailer (v6.3.0)
[2022-10-07 06:01:45]          - Downloading html2text/html2text (4.3.1)
[2022-10-07 06:01:45]          - Downloading drupal/mailsystem (4.4.0)
[2022-10-07 06:01:45]          - Downloading drupal/swiftmailer (2.2.0)
[2022-10-07 06:01:45]          - Downloading drupal/token_filter (1.4.0)
[2022-10-07 06:01:45]          - Downloading drupal/views_bulk_edit (2.6.0)
[2022-10-07 06:01:45]          - Downloading webmozart/assert (1.11.0)
[2022-10-07 06:01:45]          - Downloading webmozart/path-util (2.3.0)
[2022-10-07 06:01:45]          - Downloading webflo/drupal-finder (1.2.2)
[2022-10-07 06:01:45]          - Downloading nikic/php-parser (v4.15.1)
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[2022-10-07 06:01:45]          - Downloading league/container (4.2.0)
[2022-10-07 06:01:45]          - Downloading enlightn/security-checker (v1.10.0)
[2022-10-07 06:01:45]          - Downloading grasmash/expander (2.0.3)
[2022-10-07 06:01:45]          - Downloading consolidation/config (2.1.1)
[2022-10-07 06:01:45]          - Downloading consolidation/site-alias (3.1.5)
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[2022-10-07 06:01:45]          - Downloading consolidation/filter-via-dot-access-data (2.0.2)
[2022-10-07 06:01:45]          - Downloading symfony/polyfill-intl-grapheme (v1.26.0)
[2022-10-07 06:01:45]          - Downloading symfony/string (v6.1.4)
[2022-10-07 06:01:45]          - Downloading chi-teck/drupal-code-generator (2.5.3)
[2022-10-07 06:01:45]          - Downloading drush/drush (11.1.1)
[2022-10-07 06:01:46]            Failed to download drupal/omnipedia_access from dist: The "https://api.github.com/repos/neurocracy/drupal-omnipedia-access/zipball/7a96b3dcd4a011da1bedf90b1dd37499edc7e443" file could not be downloaded (HTTP/2 404 ):
[2022-10-07 06:01:46]        {"message":"Not Found","documentation_url":"https://docs.github.com/rest/reference/repos#download-a-repository-archive"}
[2022-10-07 06:01:46]            Now trying to download from source
[2022-10-07 06:01:46]          - Syncing drupal/omnipedia_access (3.x-dev 7a96b3d) into cache
[2022-10-07 06:01:47]            Failed to download drupal/omnipedia_block from dist: The "https://api.github.com/repos/neurocracy/drupal-omnipedia-block/zipball/963909cd53b8f4093eaf55e7f2b03f61cd361f71" file could not be downloaded (HTTP/2 404 ):
[2022-10-07 06:01:47]        {"message":"Not Found","documentation_url":"https://docs.github.com/rest/reference/repos#download-a-repository-archive"}
[2022-10-07 06:01:47]            Now trying to download from source
[2022-10-07 06:01:47]          - Syncing drupal/omnipedia_block (3.x-dev 963909c) into cache
[2022-10-07 06:01:48]            Failed to download drupal/omnipedia_commerce from dist: The "https://api.github.com/repos/neurocracy/drupal-omnipedia-commerce/zipball/626e78e599c31e5dad438754d7a0a6631f0870d4" file could not be downloaded (HTTP/2 404 ):
[2022-10-07 06:01:48]        {"message":"Not Found","documentation_url":"https://docs.github.com/rest/reference/repos#download-a-repository-archive"}
[2022-10-07 06:01:48]            Now trying to download from source
[2022-10-07 06:01:48]          - Syncing drupal/omnipedia_commerce (3.x-dev 626e78e) into cache
[2022-10-07 06:01:49]            Failed to download drupal/omnipedia_user from dist: The "https://api.github.com/repos/neurocracy/drupal-omnipedia-user/zipball/442cf21ec002af0789ca4e83826953947e0c91b1" file could not be downloaded (HTTP/2 404 ):
[2022-10-07 06:01:49]        {"message":"Not Found","documentation_url":"https://docs.github.com/rest/reference/repos#download-a-repository-archive"}
[2022-10-07 06:01:49]            Now trying to download from source
[2022-10-07 06:01:49]          - Syncing drupal/omnipedia_user (3.x-dev 442cf21) into cache
[2022-10-07 06:01:50]        
[2022-10-07 06:01:50]        In Git.php line 471:
[2022-10-07 06:01:50]                                                                                       
[2022-10-07 06:01:50]          Failed to execute git clone --mirror -- 'git@github.com:neurocracy/drupal-o  
[2022-10-07 06:01:50]          mnipedia-access.git' '/layers/heroku_php/shim/php/.composer/cache/vcs/git-g  
[2022-10-07 06:01:50]          ithub.com-neurocracy-drupal-omnipedia-access.git/'                           
[2022-10-07 06:01:50]                                                                                       
[2022-10-07 06:01:50]          Cloning into bare repository '/layers/heroku_php/shim/php/.composer/cache/v  
[2022-10-07 06:01:50]          cs/git-github.com-neurocracy-drupal-omnipedia-access.git'...                 
[2022-10-07 06:01:50]          Warning: Permanently added the ECDSA host key for IP address '140.82.121.3'  
[2022-10-07 06:01:50]           to the list of known hosts.                                                 
[2022-10-07 06:01:50]          git@github.com: Permission denied (publickey).                               
[2022-10-07 06:01:50]          fatal: Could not read from remote repository.                                
[2022-10-07 06:01:50]                                                                                       
[2022-10-07 06:01:50]          Please make sure you have the correct access rights                          
[2022-10-07 06:01:50]          and the repository exists.                                                   
[2022-10-07 06:01:50]                                                                                       
[2022-10-07 06:01:50]        
[2022-10-07 06:01:50]        install [--prefer-source] [--prefer-dist] [--prefer-install PREFER-INSTALL] [--dry-run] [--dev] [--no-suggest] [--no-dev] [--no-autoloader] [--no-progress] [--no-install] [--audit] [--audit-format AUDIT-FORMAT] [-v|vv|vvv|--verbose] [-o|--optimize-autoloader] [-a|--classmap-authoritative] [--apcu-autoloader] [--apcu-autoloader-prefix APCU-AUTOLOADER-PREFIX] [--ignore-platform-req IGNORE-PLATFORM-REQ] [--ignore-platform-reqs] [--] [<packages>...]
[2022-10-07 06:01:50]        
[2022-10-07 06:01:50] 
[2022-10-07 06:01:50]  !     ERROR: Dependency installation failed!
[2022-10-07 06:01:50]  !     
[2022-10-07 06:01:50]  !     The 'composer install' process failed with an error. The cause
[2022-10-07 06:01:50]  !     may be the download or installation of packages, or a pre- or
[2022-10-07 06:01:50]  !     post-install hook (e.g. a 'post-install-cmd' item in 'scripts')
[2022-10-07 06:01:50]  !     in your 'composer.json'.
[2022-10-07 06:01:50]  !     
[2022-10-07 06:01:50]  !     Typical error cases are out-of-date or missing parts of code,
[2022-10-07 06:01:50]  !     timeouts when making external connections, or memory limits.
[2022-10-07 06:01:50]  !     
[2022-10-07 06:01:50]  !     Check the above error output closely to determine the cause of
[2022-10-07 06:01:50]  !     the problem, ensure the code you're pushing is functioning
[2022-10-07 06:01:50]  !     properly, and that all local changes are committed correctly.
[2022-10-07 06:01:50]  !     
[2022-10-07 06:01:50]  !     For more information on builds for PHP on Heroku, refer to
[2022-10-07 06:01:50]  !     https://devcenter.heroku.com/articles/php-support
[2022-10-07 06:01:50] 
[2022-10-07 06:01:50] ERROR: failed to build: exit status 1
[2022-10-07 06:01:50] 
[2022-10-07 06:01:50] For documentation on the buildpacks used to build your app, please see:
[2022-10-07 06:01:50] 
[2022-10-07 06:01:50]    Node.js  v0.3.4    https://do.co/apps-buildpack-node
[2022-10-07 06:01:50]    PHP      v0.210.4  https://do.co/apps-buildpack-php
[2022-10-07 06:01:50] 
[2022-10-07 06:01:50]  ! Build failed
[]