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Mysql CPU alerts and max_execution_time

Posted on March 28, 2025
ndam

By ndam

Once every few weeks, I get an alert on my CPU being at 100% on my DO Managed MYSQL

I manually kill a query from DO logs and queries tab and it gets solved.

I’d like to avoid these in the future so I have tried:

  • pool.query timeouts on my app, but that won’t kill the mysql query, it will just stop the execution on the app itself
  • improved performance in many queries, but apparently some still trigger these issue once every 5000k executions or so, it has been a bit hard to know exactly when / why using DO logs
  • setting max_execution_time but DO blocks me, saying i do not have permission (even with the main DB user)
  • used to DO API to get the config values and read the API reference, but I can’t find max_execution_time, only other similar ones like innodb_lock_wait_timeout, net_read_timeout, net_write_timeout, wait_timeout… but according to chatGPT that’s not really the same

So how do I set a max timeout -or- how do i have access to kill queries that are taking too long?

When I was running my own mysql it was easy, but with DO’s limitations I’m a bit lost



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Hi there,

For the Managed Database clusters, you can’t directly make the changes, but instead, you would need to use the DigitalOcean API. You can find the documentation on how to make such config changes to your managed clusters here:

https://docs.digitalocean.com/reference/api/api-reference/#operation/databases_patch_config

Your request will look something like this:

curl -X PATCH \
  -H "Content-Type: application/json" \
  -H "Authorization: Bearer $DIGITALOCEAN_TOKEN" \
  -d '{"config": {"max_allowed_packet": "67108864","sql_require_primary_key": true}}' \
  "https://api.digitalocean.com/v2/databases/9cc10173-e9ea-4176-9dbc-a4cee4c4ff30/config"

The max_execution_time is not configurable as far as I can see, but you can try also increasing the connect_timeout instead.

Let me know how it goes!

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