How To Secure Nginx with Let's Encrypt on Ubuntu

• Use Certbot’s Nginx plugin to obtain and install free Let’s Encrypt certificates in minutes.
• Works on Ubuntu 22.04 (Jammy), 24.04 (Noble), and 25.04 (Lunar).
• Enable auto-renewal; certificates are valid for 90 days and renew automatically.
• Harden HTTPS with HSTS and modern cipher suites; validate with SSL Labs.
• Ensure DNS A records and port 80/443 are reachable; most validation failures are networking or DNS-related.

To follow this tutorial, you will need:

• One Ubuntu server set up by following this initial server setup for Ubuntu tutorial, including a sudo-enabled non-root user and a firewall.

• A registered domain name. This tutorial will use example.com throughout. You can purchase a domain name from Namecheap, or use Google Domains or your preferred domain registrar.

• Both of the following DNS records set up for your server. If you are using DigitalOcean, please see our DNS documentation for details on how to add them.

  • An A record with example.com pointing to your server’s public IP address.
  • An A record with www.example.com pointing to your server’s public IP address.

• Nginx installed by following How To Install Nginx on Ubuntu. Be sure that you have a server block for your domain. This tutorial will use /etc/nginx/sites-available/example.com as an example.

Certbot recommends using their snap package for installation. Snap packages work on nearly all Linux distributions, but they require that you’ve installed snapd first in order to manage snap packages. Ubuntu ships with snap support (22.04, 24.04, 25.04). Start by ensuring snapd is up to date:

sudo snap install core; sudo snap refresh core

If you’re working on a server that previously had an older version of certbot installed, you should remove it before going any further:

sudo apt remove certbot

After that, you can install the certbot package:

sudo snap install --classic certbot

Finally, you can link the certbot command from the snap install directory to your path, so you’ll be able to run it by just typing certbot. This isn’t necessary on all systems, but snaps tend to be less intrusive by default, so they don’t conflict with any other system packages by accident:

sudo ln -s /snap/bin/certbot /usr/bin/certbot

Alternative (APT): On some environments without snapd, you can install from Ubuntu repositories:

sudo apt update
sudo apt install -y certbot python3-certbot-nginx

The snap distribution remains the Certbot team’s recommended installation method for the latest features and timely updates.

Now that we have Certbot installed, let’s run it to get our certificate.

Certbot needs to be able to find the correct server block in your Nginx configuration for it to be able to automatically configure SSL. Specifically, it does this by looking for a server_name directive that matches the domain you request a certificate for.

If you followed the server block set up step in the Nginx installation tutorial, you should have a server block for your domain at /etc/nginx/sites-available/example.com with the server_name directive already set appropriately.

To check, open the configuration file for your domain using nano or your favorite text editor:

sudo nano /etc/nginx/sites-available/example.com

Find the existing server_name line. It should look like this:

...
server_name example.com www.example.com;
...

If it does, exit your editor and move on to the next step.

If it doesn’t, update it to match. Then save the file, quit your editor, and verify the syntax of your configuration edits:

sudo nginx -t

If you get an error, reopen the server block file and check for any typos or missing characters. Once your configuration file’s syntax is correct, reload Nginx to load the new configuration:

sudo systemctl reload nginx

Certbot can now find the correct server block and update it automatically.

Next, let’s update the firewall to allow HTTPS traffic.

If you have the ufw firewall enabled, as recommended by the prerequisite guides, you’ll need to adjust the settings to allow for HTTPS traffic. Luckily, Nginx registers a few profiles with ufw upon installation.

You can see the current setting by typing:

sudo ufw status

It will probably look like this, meaning that only HTTP traffic is allowed to the web server:

Output
Status: active

To                         Action      From
--                         ------      ----
OpenSSH                    ALLOW       Anywhere                  
Nginx HTTP                 ALLOW       Anywhere                  
OpenSSH (v6)               ALLOW       Anywhere (v6)             
Nginx HTTP (v6)            ALLOW       Anywhere (v6)

To additionally let in HTTPS traffic, allow the Nginx Full profile and delete the redundant Nginx HTTP profile allowance:

sudo ufw allow 'Nginx Full'
sudo ufw delete allow 'Nginx HTTP'

Your status should now look like this:

sudo ufw status

Output
Status: active

To                         Action      From
--                         ------      ----
OpenSSH                    ALLOW       Anywhere
Nginx Full                 ALLOW       Anywhere
OpenSSH (v6)               ALLOW       Anywhere (v6)
Nginx Full (v6)            ALLOW       Anywhere (v6)

Next, let’s run Certbot and fetch our certificates.

Certbot provides a variety of ways to obtain SSL certificates through plugins. The Nginx plugin will take care of reconfiguring Nginx and reloading the config whenever necessary. To use this plugin, type the following:

sudo certbot --nginx -d example.com -d www.example.com

This runs certbot with the --nginx plugin, using -d to specify the domain names we’d like the certificate to be valid for.

When running the command, you will be prompted to enter an email address and agree to the terms of service. After doing so, you should see a message telling you the process was successful and where your certificates are stored:

Output
IMPORTANT NOTES:
Successfully received certificate.
Certificate is saved at: /etc/letsencrypt/live/your_domain/fullchain.pem
Key is saved at: /etc/letsencrypt/live/your_domain/privkey.pem
This certificate expires on 2022-06-01.
These files will be updated when the certificate renews.
Certbot has set up a scheduled task to automatically renew this certificate in the background.

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
If you like Certbot, please consider supporting our work by:
* Donating to ISRG / Let's Encrypt: https://letsencrypt.org/donate
* Donating to EFF: https://eff.org/donate-le

Your certificates are downloaded, installed, and loaded, and your Nginx configuration will now automatically redirect all web requests to https://. Try reloading your website and notice your browser’s security indicator. It should indicate that the site is properly secured, usually with a lock icon. If you test your server using the SSL Labs Server Test, it will get an A grade.

Let’s finish by testing the renewal process.

Let’s Encrypt’s certificates are only valid for ninety days. This is to encourage users to automate their certificate renewal process. The certbot package we installed takes care of this for us by adding a systemd timer that will run twice a day and automatically renew any certificate that’s within thirty days of expiration.

You can query the status of the timer with systemctl:

sudo systemctl status snap.certbot.renew.service

Output
○ snap.certbot.renew.service - Service for snap application certbot.renew
     Loaded: loaded (/etc/systemd/system/snap.certbot.renew.service; static)
     Active: inactive (dead)
TriggeredBy: ● snap.certbot.renew.timer

To test the renewal process, you can do a dry run with certbot:

sudo certbot renew --dry-run

If you see no errors, you’re all set. When necessary, Certbot will renew your certificates and reload Nginx to pick up the changes. If the automated renewal process ever fails, Let’s Encrypt will send a message to the email you specified, warning you when your certificate is about to expire.

If you prefer hooks, you can add a post-hook to reload Nginx only when a certificate is renewed:

sudo certbot renew --dry-run --post-hook "systemctl reload nginx"

On systems using APT packages, a cron job may handle renewals; with snap, a systemd timer (snap.certbot.renew.timer) runs twice daily.

Strengthen your TLS configuration to reduce downgrade and mixed-content risks.

• Enable HSTS to force HTTPS in supported browsers:

add_header Strict-Transport-Security "max-age=31536000; includeSubDomains; preload" always;

• Prefer modern TLS protocols and ciphers (adjust to your risk profile):

ssl_protocols TLSv1.2 TLSv1.3;
ssl_prefer_server_ciphers on;
ssl_ciphers 'ECDHE-ECDSA-AES256-GCM-SHA384:ECDHE-RSA-AES256-GCM-SHA384:ECDHE-ECDSA-CHACHA20-POLY1305:ECDHE-RSA-CHACHA20-POLY1305:ECDHE-ECDSA-AES128-GCM-SHA256:ECDHE-RSA-AES128-GCM-SHA256';

• Redirect HTTP to HTTPS (Certbot can add this automatically):

server {
    listen 80;
    server_name example.com www.example.com;
    return 301 https://$host$request_uri;
}

• Validate your config with industry tools:
  • Mozilla SSL Configuration Generator (https://ssl-config.mozilla.org)
  • SSL Labs Server Test (https://www.ssllabs.com/ssltest/)

Note: Be cautious with HSTS on first enablement. If you set preload, submit your domain only after confirming a stable HTTPS setup for all subdomains.

• ACME HTTP-01 challenge fails: Ensure port 80 is reachable from the internet and not blocked by a firewall or upstream load balancer.
• DNS mismatch: Confirm A/AAAA records for example.com and www.example.com point to the correct public IP.
• Wrong Nginx server_name: Certbot locates the server block by server_name; verify it matches the requested domains.
• Rate limits: Repeated failed requests can hit Let’s Encrypt rate limits. Use --dry-run during testing and vary subdomains if needed.
• Snap vs APT conflicts: Remove older APT certbot before installing snap to avoid path conflicts.

1. What is Let’s Encrypt and how does it work with Nginx?

Let’s Encrypt is a free CA that verifies domain control and issues SSL/TLS certificates via the ACME protocol. Certbot automates domain validation (HTTP‑01 for most cases, DNS‑01 for wildcard), certificate issuance, Nginx configuration, and renewals. With the Nginx plugin, Certbot updates your server block and writes certificate files to /etc/letsencrypt/live/your_domain/.

2. Do I need a domain name to use Let’s Encrypt SSL?

Yes. Publicly trusted certificates require a registered domain with public DNS pointing to your server—IP‑only or private hostnames are not supported. Use A/AAAA records for each hostname you request. Wildcard certificates (e.g., *.example.com) require DNS‑01 validation and access to edit DNS.

3. How do I install Certbot on Ubuntu for Nginx?

Use snap (recommended): sudo snap install --classic certbot && sudo ln -s /snap/bin/certbot /usr/bin/certbot. Alternatively, sudo apt install certbot python3-certbot-nginx.

The snap package receives updates fastest and includes the Nginx plugin. Verify the version with certbot --version. If snap is unavailable, APT works but can lag in features; ensure python3-certbot-nginx is installed so Certbot can edit Nginx automatically.

4. Can I secure multiple domains or subdomains with one certificate?

Yes, Let’s Encrypt allows you to secure multiple domains and subdomains using a single certificate, known as a SAN (Subject Alternative Name) certificate. Instead of requesting and managing separate certificates for each hostname, you can combine them all under one certificate—making management and renewal much simpler.

How to do it:
When running Certbot, you can specify each domain or subdomain you want to include on your certificate by repeating the -d flag for each one. For example:

sudo certbot --nginx -d example.com -d www.example.com -d api.example.com

This command will obtain one certificate that is valid for all three names (example.com, www.example.com, api.example.com). Certbot will automatically update your Nginx configuration to use the new certificate for all listed domains.

What about wildcard domains?
If you want a certificate that covers all subdomains (such as anything.example.com), you can use a wildcard domain. This requires DNS-01 validation (proving you have control over your DNS zone), usually by adding a special TXT record to your DNS provider. For example:

sudo certbot --manual --preferred-challenges dns -d *.example.com -d example.com

You’ll be prompted to create specific DNS records during this process.

Other things to know:

• You must ensure that all specified domains are correctly pointed to your server before running Certbot.
• Be aware of Let’s Encrypt rate limits: try to group related domains into as few certificates as necessary, to minimize the chance of hitting these limits.
• When renewing, Certbot will keep all the original domains together unless you request a new set.

Using multiple -d options with Certbot is the recommended way to cover several domains/subdomains. Certificates with many SANs are ideal for sites and APIs on the same project or server.

5. How do I confirm auto-renewal is working?

Run sudo systemctl status snap.certbot.renew.timer (snap) and sudo certbot renew --dry-run. Check logs in /var/log/letsencrypt/. You can also verify expiry:

openssl x509 -in /etc/letsencrypt/live/your_domain/fullchain.pem -noout -enddate

On success, renewals occur automatically when a cert is within 30 days of expiry and Nginx is reloaded.

6. How do I configure Nginx to use the Let’s Encrypt certificate?

Certbot automatically configures Nginx with the Let’s Encrypt certificate. Typical directives in your TLS server block are:

ssl_certificate /etc/letsencrypt/live/your_domain/fullchain.pem;
ssl_certificate_key /etc/letsencrypt/live/your_domain/privkey.pem;

Validate with sudo nginx -t and apply with sudo systemctl reload nginx.

7. How can I test if my HTTPS configuration is correct?

Use external tests and client checks:

• SSL Labs Server Test: https://www.ssllabs.com/ssltest/
• Mozilla SSL Config Generator guidance: https://ssl-config.mozilla.org
• Quick checks:

curl -I http://example.com      # Expect 301 to https
curl -I https://example.com     # Confirm 200 and HSTS if enabled
openssl s_client -connect example.com:443 -servername example.com -tls1_3 < /dev/null | openssl x509 -noout -dates -issuer -subject

Also open DevTools → Security to spot mixed‑content warnings.

8. How do I set up automatic renewal for Let’s Encrypt certificates?

With snap installs, a systemd timer (snap.certbot.renew.timer) runs twice per day and renews certificates nearing expiry. Verify with systemctl status and simulate with sudo certbot renew --dry-run. If you need hooks, use:

sudo certbot renew --post-hook "systemctl reload nginx"

Ensure port 80/443 are reachable, DNS is correct, and the notification email is monitored so renewal issues are caught early.

In this tutorial, you installed the Let’s Encrypt client certbot, downloaded SSL certificates for your domain, configured Nginx to use these certificates, and set up automatic certificate renewal. You also hardened your TLS configuration with HSTS and modern ciphers and reviewed common troubleshooting steps. If you have further questions about using Certbot, the official documentation is a good place to start.

Looking ahead: For teams managing many domains, consider infrastructure-as-code automation (e.g., Ansible roles for Nginx + Certbot), DNS-01 challenges for wildcard certificates, and proactive certificate monitoring with alerting—areas well-suited for a separate advanced guide.

Further Reading

• How To Install Nginx on Ubuntu: Install Nginx, manage the service, open the firewall, and set up server blocks.
• How To Secure Nginx with Let’s Encrypt on Ubuntu 20.04: Older Ubuntu variant covering Certbot issuance, HTTPS redirects, and auto‑renewal.
• How To Acquire a Let’s Encrypt Certificate Using DNS Validation: Use DNS‑01 challenges (via acme‑dns/Certbot) for wildcard certs or when HTTP validation isn’t possible.
• How To Fix Common Let’s Encrypt Errors: Troubleshoot ACME challenges, DNS/HTTP reachability, rate limits, and renewal problems.